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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G210500.3.p | ||||||||
Common Name | PRUPE_ppa003436mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 576aa MW: 63177.2 Da PI: 8.6476 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.8 | 8.4e-18 | 271 | 320 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Prupe.5G210500.3.p 271 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 320 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-24 | 266 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-19 | 268 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.939 | 269 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-15 | 271 | 323 | No hit | No description |
Pfam | PF00010 | 3.2E-15 | 271 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-13 | 275 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA 60 KEETSVEIST AEKPVSHAAA AAAQPTSSVE HILPGGIGTY TISHISYFNQ RVPKPEGSPV 120 FTVTQPQASS TDRNVEEHSN CSSYTGSGFT LWEESALKNK GKTGKENLGE RPVGIVRGQW 180 TSSERPAQSS SNNHRNCFSA QSSGQKNISF MDMMKSAAKG STQEDELDDE EEFVLKKETS 240 TTTTTATTPY KGDLRVKVDV KGSDQKANTP RSKHSATEQR RRSKINDRFQ MLRELIPHSD 300 QKRDKASFLL EVIEYIQFLQ EKVNKYEGSY QGWNPDPAKL MPWRNNPKLR ESYCDQSRGM 360 NGGSGPALVF AAKFDEKTTS VSPSIPGSSA QNPVESDTST ETTFKAMDHH PGITSKPMPF 420 PLSMQPNFFT PVRSDGAAVP QLPPRLPSDA ENTSQHQSML CQTVSRATDG AAARDKLKEQ 480 ELTIEGGRIN ISSAYSQGLL NTLTQALQNS GVDLSQASIS VQIELGKRAN SRSPIPKSVV 540 KDNEILSSNQ GKRHSRVASG EDSEHAPKKL KTGRN* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007210865.1 | 0.0 | hypothetical protein PRUPE_ppa003436mg | ||||
Swissprot | Q9LEZ3 | 1e-140 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | M5WEB4 | 0.0 | M5WEB4_PRUPE; Uncharacterized protein | ||||
STRING | POPTR_0015s03550.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 1e-138 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G210500.3.p |
Entrez Gene | 18777940 |